Computational Biophysics Virtual Lab

The main aim of Computational Biophysics Virtual Lab is to provide tools for performing Molecular Dynamics Simulations and Analyzing the results of the simulations using professional data analysis methodologies. Through these methods we try to understand the structure, function, dynamics, and thermodynamic properties of biological molecular system, such as protein, DNA, and their complexes. [A manual content can be downloaded here.]

The main window dialog:

An Example of Structure Properties of a Loaded Molecule:

Covariance Matrix Calculation Dialog:

Principal Component Analysis Dialog:

Dielectric Properties of Protein from MD simulation run:

Root Mean Square Fluctuations and Deviations